In the VMD Main window, go to menu item Extension Visualization Movie Maker. o vmdmovie: Fixed a bug in the movie maker plugin that prevented movies from.
Write down the job ID for future reference. To make movies, we will use the VMD Movie Maker plugin. VMD can be used to animate and analyze the trajectory of molecular. If a 6-digit number appears, the job is accepted. sh file is given):īe sure to change the name to whatever your. Hit escape in vi and enter (the name of my. Unclick (1) the Rock and Roll & (2) Delete image files options, while clicking the Trajectory option, in the Movie Settings menu. Optional: Creating a Movie File (1) Choose the Extensions ®Visualization ®Movie Maker menu this will open a VMD Movie Generator window. usr/bin/time charmrun +p32 ++nodelist $NODES $NAMD DDM_60ra_nf > DDM_60ra_run8.logīe sure the email is changed to yours, the directory shows cd /scratch/username/foldername, and that you change the names where it says: $NAMD DDM_60ra_nf > DDM_60ra_run8.log. In order to rotate and zoom a movie during a trajectory we can use the VMD ViewChangeRender plugin together with MovieMaker. Click the play button in the VMD main window to play the movie. # Always ask for 16 processors per nodeĬat $PBS_NODEFILE | perl -e 'while() ' > $NODES Note that anything starting with #PBS must be present. If this is the case VMD will tell you so and google is your friend for getting the right extra software. The movie maker may (depending on your windows/linux installation) require extra software to generate the movie. Set inputname file_run6 Change to > set inputname file_run7Į) Make sure under "extendedSystem" that it reads $inputname.xscį) Hit escape in Vi and enter (be sure to change the name of the configuration file with each run):ĩ. VMD also comes with a tool to make movies, you can find it under Extensions -> Visualization -> Movie Maker.
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